Organization - Scanned Folder Linked to Processed Folder

By design, every Monitor Location is fed to every Conversion Task. You can create filters in your Conversion Tasks to process only specific files (by file name, channel name etc).

EDIT: This feature has now been moved to the main conversion task page starting 2.4.9:
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Original:
However there are cases when you want Conversion Tasks to only process files from a selected Monitor Location, you can achieve this by clicking on the Select Monitor Location check box in the Conversion Task → Expert Settings page.

See this post: