Cut's are off when using vprj file

I’m giving MCEBuddy a try, attempting to remove commercials from Silicon Dust DVR recordings. I’ve never had much luck with comskip and am using VideoReDo to set cut points & generate a vprj file.

Everything appears to be working with one exception. In the new file produced, all cuts occur 1 second early. Is there anyway to specify an offset or another way to get the cuts in the right place?