Summary of the problem or suggestion:
It would be valuable to allow multiple passes – if not a 2nd pass – of ComSkip. This is for scenarios where, for whatever reason, a 2nd pass seems to remove more commercials than the 1st.
Try daisy chaining your conversion tasks so each file will be processed 2 times that you way you can run the same file through comskip twice. Here’s an example of how to setup daisy chaining of tasks