I have been using mcebuddy so long that I can hardly remember how I installed it anymore.
I was a little dismayed to find that upgrading to 2.6 wiped my settings and I had a backlog of recordings that needed to be converted.
After getting the directory locations set back to what they were, I was able to run manual conversions and it appears that (so far) processing is proceeding per normal with my TS files being replaced by the MP4 version and the original is going to my archive folder.
The one issue that remains is that new recordings are not be processed. This is the case even when I manually select the rescan button. I must have forgotten something in the configuration. Any tips?
Figured it out! I just had to finish redoing the paths and settings. Fingers-crossed things will work now.