Handling malformed SRT timestamps

I check out your log and SRT files, it’s not related to EDL files. Your SRT files are the issue.
MCEBuddy validates and cleans up SRT files to remove invalid data.

Your SRT files are creating timestamps which aren’t in the required format so MCEBuddy is dropping them:

INFORMATION> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Validating and cleaning SRT file
2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → SRT File D:\Temp\working0\Rick and Morty - S02E08 - Interdimensional Cable 2- Tempting Fate.eng.srt
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:00:4,405 00:00:6,006
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:00:6,006 00:00:8,509
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:00:8,509 00:00:10,778
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:00:59,093 00:01:1,762
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:01:1,762 00:01:4,632
WARNING> 2021-06-02T08:41:14 MCEBuddy.Transcode.CCandSubtitles → Invalid timestamps, skipping entry : 00:01:4,632 00:01:9,103

The issue is that your SRT file timestamps are invalid:

00:00:4,405 → 00:00:6,006

The seconds needs to be a 2 digit padded numbers as defined in the specifications:

Where as your SRT file has only one digit so it’s being dropped. Which software is generating these SRT files?