So this what I end up with?
2pass=true
order=handbrake
handbrake-general=
handbrake-video=–preset-import-file PRESETNAME.json
handbrake-audio=-E faac -R auto -B 128-D 0
handbrake-audioac3=-E faac -R auto -B 384 -D 0
handbrake-ext=.mp4
handbrake-audiodelay=skip
handbrake-VideoOptimized=true
PreConversionCommercialRemover=true